💬 Prompts Library — Master Map
Overview
All prompt templates organised by tool and methodology. Each prompt follows the RCOIF framework (Role · Context · Objective · Instructions · Format) unless otherwise noted.
🤖 LLM Tools — Conversational AI
Claude (Anthropic) — claude.ai
- PT-Claude-RCOIF-Research — Academic research assistant
- 60 - Resources/61 Prompts/61.1 LLM-Tools/PT-Claude-DRCA-Paper — Paper deconstruction
- 60 - Resources/61 Prompts/61.1 LLM-Tools/PT-Claude-EGI-Exploration — Guided concept exploration
- 60 - Resources/61 Prompts/61.1 LLM-Tools/PT-Claude-AMI-Review — Iterative self-improvement
- 60 - Resources/61 Prompts/61.1 LLM-Tools/PT-Claude-Red-Team — Rival hypothesis generation
- 60 - Resources/61 Prompts/61.1 LLM-Tools/PT-Claude-IIPR-Prompt-Refinement — Prompt reverse engineering
ChatGPT (OpenAI)
- 60 - Resources/61 Prompts/61.1 LLM-Tools/PT-ChatGPT-SLR-Synthesis — Literature synthesis
- 60 - Resources/61 Prompts/61.1 LLM-Tools/PT-ChatGPT-CoT-Analysis — Chain-of-thought analysis
- 60 - Resources/61 Prompts/61.1 LLM-Tools/PT-ChatGPT-BDD-Stories — BDD scenario generation
Perplexity AI
- 60 - Resources/61 Prompts/61.1 LLM-Tools/PT-Perplexity-State-of-Art — Current state of the art search
- 60 - Resources/61 Prompts/61.1 LLM-Tools/PT-Perplexity-Dataset-Discovery — Dataset search
DeepSeek-R1
- 60 - Resources/61 Prompts/61.1 LLM-Tools/PT-DeepSeek-Reasoning — Complex reasoning tasks
- 60 - Resources/61 Prompts/61.1 LLM-Tools/PT-DeepSeek-Code-Review — Code analysis
Google Gemini
- 60 - Resources/61 Prompts/61.1 LLM-Tools/PT-Gemini-Multimodal — Diagram and figure analysis
- 60 - Resources/61 Prompts/61.1 LLM-Tools/PT-Gemini-Long-Context — Long document processing
NotebookLM (Google)
- 60 - Resources/61 Prompts/61.1 LLM-Tools/PT-NotebookLM-Paper-Corpus — Multi-paper knowledge base
AnythingLLM
- 60 - Resources/61 Prompts/61.1 LLM-Tools/PT-AnythingLLM-Local-RAG — Local RAG setup
🔍 Research Tools
Consensus
- 60 - Resources/61 Prompts/61.2 Research-Tools/PT-Consensus-Evidence — Evidence-based queries
Elicit
- 60 - Resources/61 Prompts/61.2 Research-Tools/PT-Elicit-SLR-Screening — Paper screening
Semantic Scholar
- 60 - Resources/61 Prompts/61.2 Research-Tools/PT-SemanticScholar-Search — Semantic search strategies
Google Scholar / arXiv / IEEE / ACM
- 60 - Resources/61 Prompts/61.2 Research-Tools/PT-AcademicDB-Search-Strings — Boolean search strings
Connected Papers / Research Rabbit / Litmaps
- 60 - Resources/61 Prompts/61.2 Research-Tools/PT-CitationNetwork-Strategy — Citation network exploration
Zotero
- 60 - Resources/61 Prompts/61.2 Research-Tools/PT-Zotero-Organisation — Library organisation strategy
💻 Development Tools
Claude Code
- 60 - Resources/61 Prompts/61.3 Dev-Tools/PT-ClaudeCode-Agent-Triage — Triage agent implementation
- 60 - Resources/61 Prompts/61.3 Dev-Tools/PT-ClaudeCode-Benchmark-Pipeline — Benchmark pipeline
- 60 - Resources/61 Prompts/61.3 Dev-Tools/PT-ClaudeCode-Dataset-Prep — Dataset preparation
OpenCode
- 60 - Resources/61 Prompts/61.3 Dev-Tools/PT-OpenCode-Refactor — Code refactoring
- 60 - Resources/61 Prompts/61.3 Dev-Tools/PT-OpenCode-Test-Gen — Test generation
GitHub Copilot / Cursor AI
- 60 - Resources/61 Prompts/61.3 Dev-Tools/PT-Copilot-Scaffolding — Project scaffolding
- 60 - Resources/61 Prompts/61.3 Dev-Tools/PT-Cursor-Context-Dev — Context-driven development
OpenHands (All-Hands-AI)
- 60 - Resources/61 Prompts/61.3 Dev-Tools/PT-OpenHands-Autonomous — Autonomous agent tasks
Warp AI Terminal
- 60 - Resources/61 Prompts/61.3 Dev-Tools/PT-Warp-CLI-Workflow — Terminal workflow automation
Browser OS
- 60 - Resources/61 Prompts/61.3 Dev-Tools/PT-BrowserOS-Web-Agent — Web browsing agent
🗂️ MOC — PUMA Prompts Library
Central navigation map for all research and development prompts used in the PUMA project. Prompts are organized by phase, step, tool, and methodology.
Overview
PUMA uses prompts as structured interfaces to AI tools across two main phases:
- Phase 1 (Research): 7 steps from literature exploration to critical review
- Phase 2 (Development): Architecture, implementation, prompt engineering, academic writing
All prompts follow the RCOIF framework (Role, Context, Objective, Instructions, Format) and integrate methodologies: SDD, BMAD, SLR/PRISMA, Keshav Three-Pass, DSR, Grounded Theory, EGI, AMI, DRCA, IIPR.
Phase 1 — Research Prompts
Step 1 — Literature Exploration
| ID | Title | Tool | Rating |
|---|---|---|---|
| PT-P1S1-001-SemanticScholar-CoreSearch | Semantic Scholar Core Search | Semantic Scholar | ⭐⭐⭐⭐⭐ |
| PT-P1S1-002-SemanticScholar-TaskSpecific | Semantic Scholar Task-Specific | Semantic Scholar | ⭐⭐⭐⭐⭐ |
| PT-P1S1-003-GoogleScholar-BroadSweep | Google Scholar Broad Sweep | Google Scholar | ⭐⭐⭐⭐⭐ |
| PT-P1S1-004-arXiv-FrontierScan | arXiv Frontier Scan | arXiv | ⭐⭐⭐⭐⭐ |
| PT-P1S1-005-Consensus-EvidenceSearch | Consensus Evidence Search | Consensus | ⭐⭐⭐⭐⭐ |
| PT-P1S1-006-Undermind-HighPrecision | Undermind High-Precision | Undermind | ⭐⭐⭐⭐⭐ |
| PT-P1S1-007-ResearchRabbit-SeedExpansion | Research Rabbit Seed Expansion | Research Rabbit | ⭐⭐⭐⭐⭐ |
| PT-P1S1-008-Elsevier-Scopus-Search | Elsevier/Scopus Search | Elsevier/Mendeley | ⭐⭐⭐⭐ |
Step 2 — Scientific Mapping
| ID | Title | Tool | Rating |
|---|---|---|---|
| PT-P1S2-001-ConnectedPapers-CitationMap | Connected Papers Citation Map | Connected Papers | ⭐⭐⭐⭐⭐ |
| PT-P1S2-002-LitMaps-TemporalEvolution | LitMaps Temporal Evolution | LitMaps | ⭐⭐⭐⭐⭐ |
| PT-P1S2-003-Claude-LiteratureSynthesis-RCOIF | Claude Literature Synthesis | Claude | ⭐⭐⭐⭐⭐ |
| PT-P1S2-004-Perplexity-FastEvidenceMap | Perplexity Fast Evidence Map | Perplexity | ⭐⭐⭐⭐ |
| PT-P1S2-005-Gemini-BroadCorpusSynthesis | Gemini Broad Corpus Synthesis | Gemini | ⭐⭐⭐⭐ |
Step 3 — Structured Extraction
| ID | Title | Tool | Rating |
|---|---|---|---|
| PT-P1S3-001-Elicit-DataExtraction | Elicit Data Extraction | Elicit | ⭐⭐⭐⭐⭐ |
| PT-P1S3-002-NotebookLM-CorpusExtraction | NotebookLM Corpus Extraction | NotebookLM | ⭐⭐⭐⭐⭐ |
| PT-P1S3-003-Zotero-BibliographicCuration | Zotero Bibliographic Curation | Zotero | ⭐⭐⭐⭐⭐ |
| PT-P1S3-004-Researcher-MonitoringFeed | Researcher Monitoring Feed | Researcher | ⭐⭐⭐⭐ |
Step 4 — Conceptual Synthesis
| ID | Title | Tool | Rating |
|---|---|---|---|
| PT-P1S4-001-Claude-TheoreticalFramework | Claude Theoretical Framework | Claude | ⭐⭐⭐⭐⭐ |
| PT-P1S4-002-ChatGPT-ZettelkastenNotes | ChatGPT Zettelkasten Notes | ChatGPT | ⭐⭐⭐⭐⭐ |
| PT-P1S4-003-Gemini-ConceptualModel | Gemini Conceptual Model | Gemini | ⭐⭐⭐⭐ |
Step 5 — Hypothesis Generation
| ID | Title | Tool | Rating |
|---|---|---|---|
| PT-P1S5-001-Claude-HypothesisFormulation | Claude Hypothesis Formulation | Claude | ⭐⭐⭐⭐⭐ |
| PT-P1S5-002-ChatGPT-RivalHypotheses | ChatGPT Rival Hypotheses | ChatGPT | ⭐⭐⭐⭐⭐ |
Step 6 — Experimental Design
| ID | Title | Tool | Rating |
|---|---|---|---|
| PT-P1S6-001-Claude-ExperimentProtocol | Claude Experiment Protocol | Claude | ⭐⭐⭐⭐⭐ |
| PT-P1S6-002-ChatGPT-DatasetPreparation | ChatGPT Dataset Preparation | ChatGPT | ⭐⭐⭐⭐⭐ |
Step 7 — Critical Review
| ID | Title | Tool | Rating |
|---|---|---|---|
| PT-P1S7-001-Claude-PeerReviewSimulation | Claude Peer Review Simulation | Claude | ⭐⭐⭐⭐⭐ |
| PT-P1S7-002-Grok-AdversarialCritique | Grok Adversarial Critique | Grok | ⭐⭐⭐⭐ |
| PT-P1S7-003-Perplexity-ClaimVerification | Perplexity Claim Verification | Perplexity | ⭐⭐⭐⭐ |
Phase 2 — Development Prompts
| ID | Title | Tool | Rating |
|---|---|---|---|
| PT-P2-001-Claude-ArchitectureDesign-SDD | Architecture Design (SDD/BMAD) | Claude | ⭐⭐⭐⭐⭐ |
| PT-P2-002-CursorClaudeCode-Implementation | Cursor/Claude Code Implementation | Cursor + Claude Code | ⭐⭐⭐⭐⭐ |
| PT-P2-003-PromptEngineering-AgentPrompts | Agent Prompt Engineering | Context Engineering | ⭐⭐⭐⭐⭐ |
| PT-P2-004-AcademicWriting-ThesisChapters | Academic Writing — Thesis Chapters | Claude + ChatGPT | ⭐⭐⭐⭐⭐ |
Methodology Prompts
| ID | Title | Methodology | Rating |
|---|---|---|---|
| PT-METH-001-PRISMA-Protocol | PRISMA Protocol SLR | PRISMA 2020 + Kitchenham | ⭐⭐⭐⭐⭐ |
| PT-METH-002-Keshav-ThreePass | Keshav Three-Pass Reading | Keshav (2007) | ⭐⭐⭐⭐⭐ |
| PT-METH-003-DSR-ArtifactDesign | DSR Artifact Design | Hevner 2004 + Peffers 2007 | ⭐⭐⭐⭐⭐ |
| PT-METH-004-GroundedTheory-QualitativeAnalysis | Grounded Theory Analysis | Strauss & Corbin 1990 | ⭐⭐⭐⭐ |
Tool Coverage Matrix
| Tool | Phase 1 Prompts | Phase 2 Prompts |
|---|---|---|
| Semantic Scholar | PT-P1S1-001, PT-P1S1-002 | — |
| Google Scholar | PT-P1S1-003 | — |
| arXiv | PT-P1S1-004 | — |
| Consensus | PT-P1S1-005 | — |
| Undermind | PT-P1S1-006 | — |
| Research Rabbit | PT-P1S1-007 | — |
| Elsevier/Mendeley | PT-P1S1-008 | — |
| Connected Papers | PT-P1S2-001 | — |
| LitMaps | PT-P1S2-002 | — |
| Claude | PT-P1S2-003, PT-P1S4-001, PT-P1S5-001, PT-P1S6-001, PT-P1S7-001 | PT-P2-001, PT-P2-004 |
| Perplexity | PT-P1S2-004, PT-P1S7-003 | — |
| Gemini | PT-P1S2-005, PT-P1S4-003 | — |
| Elicit | PT-P1S3-001 | — |
| NotebookLM | PT-P1S3-002 | — |
| Zotero | PT-P1S3-003 | — |
| Researcher | PT-P1S3-004 | — |
| ChatGPT | PT-P1S4-002, PT-P1S5-002, PT-P1S6-002 | PT-P2-004 |
| Grok | PT-P1S7-002 | — |
| Cursor + Claude Code | — | PT-P2-002 |
Methodology Coverage Matrix
| Methodology | Prompts |
|---|---|
| SLR / PRISMA | PT-P1S1-001–008, PT-METH-001 |
| Keshav Three-Pass | PT-P1S3-002, PT-METH-002 |
| RCOIF Framework | PT-P1S1-006, PT-P1S2-003, PT-P1S4-001, PT-P1S5-001, PT-P1S6-001, PT-P2-001 |
| DSR (Hevner/Peffers) | PT-METH-003, PT-P1S6-001 |
| EGI (Exploratory Guided Iteration) | PT-P1S5-001 |
| AMI (Auto-Diagnosis and Improvement) | PT-P1S2-003, PT-P1S7-001 |
| DRCA (Deconstruction-Reconstruction) | PT-P1S4-001 |
| IIPR (Inverse Prompt Engineering) | PT-P1S5-002 |
| Grounded Theory | PT-METH-004 |
| SDD / BMAD / OpenSpec | PT-P2-001 |
| Context Engineering | PT-P2-003 |
| Marco Veritas | PT-P1S3-003, PT-P1S7-003, PT-P2-004 |
| Wilcoxon / Statistics | PT-P1S6-001 |
| CodeCarbon / Sustainability | PT-P1S6-001, PT-P2-002 |
Related MOCs
- MOC-Research-Pipeline
- MOC-LLM-Benchmarks-PM-AI
- MOC-Tools-Stack
- MOC-Methods-Frameworks
- MOC-PUMA-Master
🧪 PUMA Experiment Prompts (Ollama)
Issue Triage Prompts (Jira SR)
- 60 - Resources/61 Prompts/PT-PUMA-Triage-ZeroShot — Zero-shot triage
- 60 - Resources/61 Prompts/PT-PUMA-Triage-FewShot3 — 3-shot triage
- 60 - Resources/61 Prompts/PT-PUMA-Triage-FewShot6 — 6-shot triage
- 60 - Resources/61 Prompts/PT-PUMA-Triage-CoT — Chain-of-thought triage
Effort Estimation Prompts (TAWOS)
- 60 - Resources/61 Prompts/PT-PUMA-Estimation-ZeroShot — Zero-shot estimation
- 60 - Resources/61 Prompts/PT-PUMA-Estimation-FewShot — Few-shot estimation
- 60 - Resources/61 Prompts/PT-PUMA-Estimation-CoT — CoT estimation
📊 Prompt Methodology Index
| Methodology | Notes | Example Prompt |
|---|---|---|
| RCOIF | PN-RCOIF-Framework | PT-Claude-RCOIF-Research |
| Zero-Shot CoT | 30 - Permanent/31 Concepts/PN-Chain-of-Thought | 60 - Resources/61 Prompts/PT-PUMA-Triage-CoT |
| Few-Shot | 30 - Permanent/31 Concepts/PN-Few-Shot-Prompting | 60 - Resources/61 Prompts/PT-PUMA-Triage-FewShot3 |
| EGI | PN-EGI-Framework | 60 - Resources/61 Prompts/61.1 LLM-Tools/PT-Claude-EGI-Exploration |
| AMI | 30 - Permanent/33 Frameworks/PN-AMI-Framework | 60 - Resources/61 Prompts/61.1 LLM-Tools/PT-Claude-AMI-Review |
| DRCA | 30 - Permanent/33 Frameworks/PN-DRCA-Framework | 60 - Resources/61 Prompts/61.1 LLM-Tools/PT-Claude-DRCA-Paper |
| IIPR | 30 - Permanent/33 Frameworks/PN-IIPR-Framework | 60 - Resources/61 Prompts/61.1 LLM-Tools/PT-Claude-IIPR-Prompt-Refinement |
| Contextual Anchoring | 30 - Permanent/33 Frameworks/PN-Contextual-Anchoring | Multiple |