🗃️ MOC — Zettelkasten PUMA Knowledge Graph

Overview

Navigation map for the Zettelkasten layer of the PUMA vault. Inspired by Obsidian Zettelkasten Starter Kit by Edmund Gröpl.

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Zettelkasten Hub

→ ZK-Hub-PUMA — main hub with Dataview indexes

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Structure Notes (Thematic Clusters)

→ ST-Prompting-Strategies — how prompting strategies affect LLM performance → ST-Reproducibility-Cluster — reproducibility crisis in LLM-SE research

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Permanent Notes — by Theme

🤖 LLM & AI Concepts (31 Concepts)

• PN-CoT-FewShot-Prompting — CoT + few-shot strategies
• PN-IssueTriage-StoryPoints — PM domain concepts
• PN-KeyConcepts-Agents-Reproducibility-RedTeam — agents + reproducibility
• PN-LLM-Local-vs-Cloud — local vs cloud tradeoffs
• PN-RAG-Embeddings-VectorDB — retrieval-augmented generation
• PN-ActiveReading-CognitivePractice — active reading methodology
• PN-MultiAgent-ArchitecturePatterns — multi-agent patterns (→ Smart PMO)
• PN-ReAct-AgentPattern — ReAct reasoning + action loop
• PN-Agentic-Science-Paradigm — AI as active scientific agent
• PN-AI-Scientific-Knowledge-Generation — AI-generated scientific knowledge
• PN-PUMA-within-AgenticScience-Trajectory — PUMA’s trajectory in agentic science
• PN-ToolSelection-PUMA — PUMA tool selection rationale

🔬 Research Methods (32 Methods)

• PN-DSR-SLR-Methods — DSR + SLR paradigms
• PN-Wilcoxon-FINER-Cornell-PRISMA — statistical methods

🧠 Frameworks (33 Frameworks)

• PN-MIT-Student-Method — MIT AI Lab active reading method (summary)
• PN-MIT-Student-Method-Complete — MIT AI Lab Q1/Q2/Q3 + Keshav (full)
• PN-SDD-Framework — SDD + OpenSpec + SpecKit + BMAD
• PN-RCOIF-Framework — RCOIF prompting
• PN-EGI-Framework — exploratory guided interaction
• PN-AMI-DRCA-IIPR-Frameworks — AMI + DRCA + IIPR
• PN-PARA-GTD-Zettelkasten — PARA + GTD + Zettelkasten integration

📊 Results (34 Results)

• RES-Results-Placeholders — experiment results placeholders (Stage 1 & 2)

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Source Notes (Bibliographic Anchors)

→ SRC-MITAILab-WP316 — WP 316 source (new) → SRC-Keshav-2007-HowToReadPaper — Keshav 2007 (new)

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Person Notes (Key Thinkers)

→ PER-Keshav-Srinivasan — Three-Pass Method author → PER-Flyvbjerg-Bent — Uniqueness Trap / Reference Class Forecasting → PER-Yao-Shunyu — ReAct + Tree of Thoughts → PER-Hong-Sirui-MetaGPT — MetaGPT multi-agent framework → PER-Assalaarachchi-Nuwan — Agentic SPM vision

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Zettelkasten Health

TABLE length(file.inlinks) AS "↙ Inlinks", length(file.outlinks) AS "↗ Outlinks", type AS "Type"
FROM "30 - Permanent"
WHERE type = "permanent" OR type = "structure-note"
SORT length(file.inlinks) DESC
LIMIT 20

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Note Flow Diagram

[Fleeting Note] → Inbox
      ↓ (process, 48h)
[Literature Note] → 20 - Literature (Keshav Pass 1–2)
      ↓ (Pass 3 + Q1/Q2/Q3)
[Permanent Note] → 30 - Permanent/31–33 (atomic, declarative)
      ↓ (cluster)
[Structure Note] → 30 - Permanent/30 ZK-Hub (thematic index)
      ↓ (navigation)
[MOC] → 80 - MOC (cross-project view)

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Zettelkasten approach adapted from groepl/Obsidian-Zettelkasten-Starter-Kit · April 2026